Publications of Marcus A. Brubaker
A BIB file with all of my publications is available here. You can also visit my Google
Scholar page or see my CV for more
information.
Book Chapters and Tutorials
- Video-based People Tracking.
Marcus A. Brubaker, Leonid Sigal and David J. Fleet. In Handbook
on Ambient Intelligence and Smart Environments. H. Nakashima, H.
Aghajan, and J.C. Augusto (Eds). Springer Verlag, 2009. (pdf preprint)
- Physics-Based Human Motion
Modelling for People Tracking. Marcus A. Brubaker,
Leonid Sigal and David J. Fleet. Tutorial at IEEE ICCV 2009.
(website, including slides, code and report)
Journal Articles
- Introduction and Initial Evaluation
of a Novel Three-Dimensional Imaging and Analysis System for Firearm
Forensics. Todd Weller, Marcus A. Brubaker, Pierre Duez and Ryan Lilien.
Association of Firearm and Tool Mark Examiners (AFTE) Journal, (to appear, 2015).
- Stan: A Probabilistic Programming
Language. Bob Carpenter, Andrew Gelman, Matt Hoffman, Daniel Lee,
Ben Goodrich, Michael Betancourt, Marcus A. Brubaker, Jiqiang Guo, Peter Li,
and Allen Riddell. Journal of Statistical Software, (to appear, 2015).
- Map-Based Probabilistic Visual
Self-Localization. Marcus A. Brubaker, Andreas Geiger and
Raquel Urtasun.
IEEE Transactions on Pattern Analysis and Machine Intelligence, (2015).
(pdf preprint)
- Alignment of cryo-EM movies of
individual particles by optimization of image translations.
John L. Rubinstein and Marcus A. Brubaker.
Journal of Structural Biology, (2015).
(arXiv)
(article)
- Description and comparison of
algorithms for correcting anisotropic magnification in cryo-EM images.
Jianhua Zhao, Marcus A. Brubaker, Samir Benlekbir and John L. Rubinstein.
Journal of Structural Biology, (2015).
(arXiv)
(article)
- Efficient Optimization for
Sparse Gaussian Process Regression. Yanshuai Cao,
Marcus A. Brubaker, David J. Fleet and Aaron Hertzmann.
IEEE Transactions on Pattern Analysis and Machine Intelligence, (2015).
(pdf preprint)
- TMaCS: A hybrid template
matching and classification system for partially-automated
particle selection. Jianhua Zhao, Marcus A. Brubaker
and John L. Rubinstein. Journal of Structural Biology (2013).
(article)
(source)
- A Bayesian Method for 3-D
Macromolecular Structure Inference using Class Average Images
from Single Particle Electron Microscopy. Navdeep
Jaitly, Marcus A. Brubaker, John L. Rubinstein, and Ryan H.
Lilien. Bioinformatics (2010). (pdf preprint)
(project website,
including code)
- Physics-based Person
Tracking Using the Anthropomorphic Walker. Marcus A.
Brubaker, David J. Fleet and Aaron Hertzmann. International
Journal of Computer Vision, Volume 87, Issue 1 (2010), pg 140. (pdf preprint) (code)
Conference Papers
- Building Proteins in a Day: Efficient
3D Molecular Reconstruction.
Marcus A. Brubaker, Ali Punjani and David J. Fleet.
In Proceedings of CVPR 2015.
(pdf preprint)
(extended abstract)
(arXiv)
(code)
- Bayesian Filtering with Online
Gaussian Process Latent Variable Models.
Yali Wang, Marcus A. Brubaker, Brahim Chaib-draa and Raquel Urtasun.
In Proceedings of UAI 2014.
(pdf preprint)
- Efficient Optimization
for Sparse Gaussian Process Regression.
Yanshuai Cao, Marcus A. Brubaker, Aaron Hertzmann, and David J. Fleet.
In Proceedings of NIPS 2013.
(pdf preprint)
(project website, including code)
(arXiv)
(official proceedings)
- Lost! Leveraging the
Crowd for Probabilistic Visual Self-Localization.
Marcus A. Brubaker, Andreas Geiger and Raquel Urtasun. In
Proceedings of IEEE CVPR 2013. Award Winner: Best Paper
Runner-Up
(pdf preprint)
(supplemental pdf)
(code)
(poster pdf)
(presentation video)
(slides pdf)
(video)
(YouTube)
- A Family of MCMC Methods on
Implicitly Defined Manifolds. Marcus A. Brubaker,
Mathieu Salzmann and Raquel Urtasun. In Proceedings of
AISTATS 2012. (pdf preprint) (code and poster)
- Estimating Contact Dynamics.
Marcus A. Brubaker, Leonid Sigal and David J. Fleet. In
Proceedings of IEEE ICCV 2009. (pdf preprint) (avi MoCap) (YouTube Mocap) (avi Tracking) (YouTube Tracking)
- The Kneed Walker for Human
Pose Tracking. Marcus A. Brubaker and David J.
Fleet. In Proceedings of IEEE CVPR 2008. (pdf preprint)
(avi)
(YouTube)
- Physics-based Person
Tracking Using Simplified Lower Body Dynamics. Marcus
A. Brubaker, David J. Fleet and Aaron Hertzmann. In
Proceedings of IEEE CVPR 2007. (pdf preprint)
(avi)
(YouTube)
Contributions without Proceedings
- Microscopic Advances
with Large-Scale Learning: Stochastic Optimization for
Cryo-EM.
Ali Punjani and Marcus A. Brubaker.
Oral presentation at the NIPS Workshop: Machine Learning
in Computational Biology. December 2014.
(arXiv)
- Development of a
3D-Topography Imaging and Analysis System for Firearm
Identification using GelSight and Feature Based Case
Matching.
Ryan H. Lilien, Marcus A. Brubaker, and Todd Weller.
Oral presentation at The Association of Firearm and Tool
Mark Examiners (AFTE) Annual Training Seminar (Albuquerque).
June 2013.
- A Bayesian method for 3D
reconstruction of macromolecular structure using class
averages from single particle electron microscopy.
Navdeep Jaitly, Marcus A. Brubaker, John Rubinstein and Ryan H.
Lilien. Oral presentation at Neural Information Processing
Systems Workshop: Machine Learning in Computational Biology.
December 2009.
- Physics-Based Human Pose
Tracking. Marcus A. Brubaker, David J. Fleet and Aaron
Hertzmann. Oral presentation at Neural Information
Processing Systems Workshop: Evaluation of Articulated Human
Motion and Pose Estimation. December 2006.
Theses and Unreviewed Contributions
- The Stan Math Library:
Reverse-Mode Automatic Differentiation in C++.
Bob Carpenter, Matthew D. Hoffman, Marcus A. Brubaker, Daniel Lee, Peter Li and Michael Betancourt.
arXiv e-prints cs.MS/1509.07164. September 2015.
(arXiv)
- Microscopic Advances
with Large-Scale Learning: Stochastic Optimization for
Cryo-EM.
Ali Punjani and Marcus A. Brubaker.
arXiv e-prints stat.ML/1501.04656. January 2015.
(arXiv)
- Physical Models of Human
Motion for Estimation and Scene Analysis. Marcus A.
Brubaker. PhD Thesis. September 2011. (pdf preprint)
- Physics-Based Priors for
Human Pose Tracking. Marcus A. Brubaker. MSc Thesis.
September 2006. (pdf preprint)
(videos)