Please Cite

Wong KC, Chan TM, Peng C., Li Y., and Zhang Z. "DNA Motif Elucidation using belief propagation" Nucleic Acids Research. Advanced Online June 2013; doi: 10.1093/nar/gkt574


Berger, M. F., Philippakis, A. A., Qureshi, A. M., He, F. S., Estep, P. W., and Bulyk, M. L. (2006). Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nat. Biotechnol., 24, 1429–1435.

Chen, X., Hughes, T. R., and Morris, Q. (2007). RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors. Bioinformatics, 23, i72–79.

Robasky, K. and Bulyk, M. L. (2011). UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res., 39, D124–128.

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