Meng(Simon) Zhou (周蒙)

MSc. in Computer Science Candidate
Department of Computer Science
Intelligent Medical Image Computing Systems Lab (IMICS)
The Hospital for Sick Children (SickKids)
University of Toronto
Peter Gilgan Centre for Research and Learning (PGCRL) Building
686 Bay St, Toronto, Ontario, Canada

Email: simon DOT zhou AT mail.utoronto.ca

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Research Interests
I am currently working at the intersection between Deep Learning and Medical Imaging; I am also interested in NLP for healthcare. Previously, I have worked on the Sequential Decision (theoretical RL) related research. My research could be categorized into:
- Computational Methodology in Medical Data (image, text, time series data, etc.)
- Deep Learning applications for Medical Image Analysis
- GAN-based Image Generation, Generative Image Transformer
- Contextual Multi-armed Bandit Problem


Short Bio

- I am currently pursuing my MSc. degree in Computer Science at The University of Toronto .

- I am in the Intelligent Medical Image Computing Systems Lab, and I am very fortunate to be supervised by Dr. Farzad Khalvati.

- I am also a graduate research assistant at The Hospital for Sick Children, one of the top three paediatric health-care centres in the world. I am working in the Department of Neurosciences & Mental Health. My current research is focusing on Paediatric Low Grade Gliomas diagnosis.

- I obtained my Honours Bachelor's degree in Computing, Specialized in Computing and Mathematics from Queen's University.

- My undergraduate honours thesis "Domain Transfer Through Image-to-Image Translation in Prostate Cancer Detection" is supervised by Dr. Parvin Mousavi at the Medical Informatics Laboratory from Sept. 2021 to May 2022.

- I graduated from Yale Secondary School, a beautiful high school in British Columbia in June 2017.

- This is my main academic page, I have another website for personal, you may access from here.

Education
MSc. in Computer Science (Research) 2022-2024
University of Toronto | Toronto, Ontario
BCMPH. in Computing and Mathematics Specialization 2017-2022
Queen's University | Kingston, Ontario
Experience
Machine Learning Researcher | SickKids Research | Toronto, Ontario Sep 2022 - Present
Research Assistant | Medical Informatics Lab | Kingston, Ontario Sep 2021 - May 2022
Algorithm Engineer Intern | Illuminera Ghawar | Shanghai Apr 2021 - Jul 2021
Research Assistant | Queen's University | Kingston, Ontario May 2020 - Feb 2022
Summer Intern | Deloitte Consulting | Beijing May 2019 - Jul 2019
Research Contributions (# corresponding)
DT_UE_pic Domain Transfer Through Image-to-Image Translation for Uncertainty-Aware Prostate Cancer Classification
Meng Zhou, Amoon Jamzad, Jason Izard, Alexandre Menard, Robert Siemens, Parvin Mousavi#,
arxiv Preprint. Under review as a journal paper, 2023
bibtex

In this paper, we have presented a novel approach for unpaired image-to-image translation of prostate mp-MRI for classifying clinically significant PCa, to be applied in data-constrained settings. First, we introduce domain transfer, a novel pipeline to translate unpaired 3.0T multi-parametric prostate MRIs to 1.5T, to increase the number of training data. Second, we estimate the uncertainty of our models through an evidential deep learning approach; and leverage the dataset filtering technique during the training process. Furthermore, we introduce a simple, yet efficient Evidential Focal Loss that incorporates the focal loss with evidential uncertainty to train our model. Experiments have shown the superior performance of the proposed approach.

Truncated LinUCB for Stochastic Linear Bandits Truncated LinUCB for Stochastic Linear Bandits
Yanglei Song#, Meng Zhou
arXiv Preprint. Under first round revision as a journal paper, 2022
bibtex

We consider contextual bandits with a finite number of arms, where the contexts are independent and identically distributed d-dimensional random vectors, and the expected rewards are linear in both the arm parameters and contexts. We propose a truncated version of LinUCB and termed "Tr-LinUCB", which follows LinUCB up to a truncation time S and performs pure exploitation afterwards. The Tr-LinUCB algorithm is shown to achieve O(dlog(T)) regret if S=Cdlog(T) for a sufficiently large constant C, and a matching lower bound is established, which shows the rate optimality of Tr-LinUCB in both d and T under a low dimensional regime.

DT_cover_pic Domain Transfer Through Image-to-Image Translation in Prostate Cancer Detection
Meng Zhou, Amoon Jamzad, Jason Izard, Alexandre Menard, Robert Siemens, Parvin Mousavi#,
Abstract, In Proceedings of the 20th Annual Symposium of the Imaging Network of Ontario (ImNO), March 2022
bibtex

We propose an unpaired Image-to-Image translation framework to translate 3.0T prostate MRI data to 1.5T-like prostate MRI data, and then use a 3D Multi-Stream Convolutional Neural Network to classify the clinically significant Prostate Cancer.

Projects (* equal contributions)
An Attention-based Multi-Scale Feature Learning Network for Multimodal Medical Image Fusion An Attention-based Multi-Scale Feature Learning Network for Multimodal Medical Image Fusion
Meng Zhou, Xiaolan Xu, Yuxuan Zhang
arXiv Preprint, 2022
bibtex

We introduce a novel Dilated Residual Attention Network for the medical image fusion task. Our network is capable to extract multi-scale deep semantic features. Furthermore, we propose a novel fixed fusion strategy termed Softmax-based weighted strategy based on the Softmax weights and matrix nuclear norm. Extensive experiments show our proposed network and fusion strategy exceed the state-of-the-art performance compared with reference image fusion methods

Heuristic Hyperparameter Optimization for Convolutional Neural Networks using Genetic Algorithm Heuristic Hyperparameter Optimization for Convolutional Neural Networks using Genetic Algorithm
Meng Zhou
arXiv Preprint, 2021
bibtex

We develop a new optimization framework, genetic-based evolutionary strategy, to optimize the convolutional neural networks architecture for the Chest X-Ray classification task. Experiments show that the proposed framework overperforms the results from the pre-trained model on ImageNet and fine tune on the X-Ray images.

shoulder_implant Shoulder Implant X-Ray Manufacturer Classification: Exploring with Vision Transformer
Meng Zhou*, Shanglin Mo*
arXiv Preprint, 2021
bibtex

We compare the performance of various deep models, ranging from traditional machine learning methods, CNN-based deep learning methods to the modern state-of-the-art Vision Transformer (ViTs) models. The results have showen that ViTs achieved the best performance in X-Ray classification task, and transfer learning improved ViT by a large margin.

Talks
DT_Prostate Domain Transer through Image-to-Image translation in Prostate Cancer Detection
Meng Zhou, Amoon Jamzad, Jason Izard, Alexandre Menard, Robert Siemens, Parvin Mousavi
20th Annual Symposium of the Imaging Network of Ontario (ImNO), Mar. 2022
bibtex

Pitch-and-Poster Presentation at the 2022 Imaging Network Ontario Symposium.

Towards_DT_Prostate Towards Domain Translation in Prostate Cancer Detection
Meng Zhou, Amoon Jamzad, Jason Izard, Alexandre Menard, Robert Siemens, Parvin Mousavi
Vector Institute Research Symposium, Feb. 2022

Poster Presentation at Vector Institute Research Symposium. We take the 3.0T MRI images from the “ProstateX” challenge; translate to 1.5T-like MRI images based on the Cycle-GAN framework; and train a 3D Convolutional Neural Network for Prostate Cancer classification on translated images for the local use.

Honors and Awards
Ontario Graduate Scholarship Recipient | Department of Computer Science, University of Toronto 2023
DCS Graduate Program Fellowship | Department of Computer Science, University of Toronto 2023
Mergelas Family Graduate Award | Temerty Faculty of Medicine, University of Toronto 2022
Dean's Honor List | Queen's University 2019,2020,2021
John Ursell Tutor Award | Queen's University 2020
Services
Reviewer | DGM4MICCAI Workshop @ MICCAI Conference 2023 2023
Teaching
TA - CSC108H1: Introduction to Computer Programming (at UofT) Winter 2023
TA - CSC108H1: Introduction to Computer Programming (at UofT) Fall 2022
TA - STAT 457/857: Statistical Learning II (at Queen's) Winter 2022
TA - CISC/CMPE 457: Image Processing and Computer Vision (at Queen's) Fall 2021
TA - MATH 121/110: Calculus & Linear Algebra (at Queen's) Fall 2020
TA - CISC 221: Computer Architecture (at Queen's) Fall 2019 & Winter 2022
Recent News

--- I have received the Ontario Graduate Scholarship (OGS) at the University of Toronto DCS!

--- Jan 2023. continued to be the TA of CSC108H1S.

--- I have received the Mergelas Family Graduate Award from Univeristy of Toronto, Temerty Faculty of Medicine!

--- Sept. 2022, started to work at the SickKids Research Institute as a grad student. Started to be the TA of CSC108H1F.

--- May 2022, finalized my undergrad thesis to a formal journal paper.

--- Apr. 2022, submitted our paper to JMLR.

--- Mar. 2022, participated in 2022 Image Network Ontario Symposium (pitch and poster presentation).

--- Feb. 2022, poster presentation at the Vector Institute Research Symposium, admitted to UofT MSc. in CS!!!

--- Jan. 2022, started to be the TA of CISC221 and STAT457.

--- Sept. 2021, started to be the TA of CISC457.



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