> begin captured stdout << ---------------------
Failed to drop table T_030769dac03342b5b48d9197c72c2113Per_Image
Failed to drop table T_030769dac03342b5b48d9197c72c2113Per_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_c14b626849df4bc497826209cf9512daPer_Image
Failed to drop table T_c14b626849df4bc497826209cf9512daPer_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_6fdc9bca699643b19beec61038ba2939Per_Image
Failed to drop table T_6fdc9bca699643b19beec61038ba2939Per_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_4a04b1acefbc4f44b06f1dd97d0b5e9dPer_Image
Failed to drop table T_4a04b1acefbc4f44b06f1dd97d0b5e9dPer_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_59e8fad6562643628a3a460e7a6b10a5Per_Image
Failed to drop table T_59e8fad6562643628a3a460e7a6b10a5Per_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_c02eac94756348b29a0bdae00c8a54cbPer_Image
Failed to drop table T_c02eac94756348b29a0bdae00c8a54cbPer_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_38a249a394734617977f7c4f7e896c8ePer_Image
Failed to drop table T_38a249a394734617977f7c4f7e896c8ePer_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_68ead7d9665e45558f606771018f7df9Per_Image
Failed to drop table T_68ead7d9665e45558f606771018f7df9Per_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_9a32f79ea67e4fc480566be114363ff8Per_Image
Failed to drop table T_9a32f79ea67e4fc480566be114363ff8Per_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_6a1fcf64e9db4b8a80986eff4f8a7a3aPer_Image
Failed to drop table T_6a1fcf64e9db4b8a80986eff4f8a7a3aPer_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_8512c72716154f3cb273a6eec311e143Per_Image
Failed to drop table T_8512c72716154f3cb273a6eec311e143Per_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_1a324bd3db8e462496e1400b1d966795Per_Image
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_77c2bbef924848b7ade052051835f04ePer_Image
Failed to drop table T_77c2bbef924848b7ade052051835f04ePer_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_41b230277d1449e6ba1e97732f2df4daPer_Image
Failed to drop table T_41b230277d1449e6ba1e97732f2df4daPer_myobject
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_4f6403cd9689453dbad927f7a7574019Per_Image
Failed to drop table T_4f6403cd9689453dbad927f7a7574019Per_myobject
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_3c2fb73f53384e96a7cf4983c0aa258cPer_Image
Failed to drop table T_3c2fb73f53384e96a7cf4983c0aa258cPer_myobject
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_75dac4b6e2844ce498872402d4a67ee4Per_Image
Failed to drop table T_75dac4b6e2844ce498872402d4a67ee4Per_myobject
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_0eb34fb2005c4a23a0b227c55f7a10aePer_Image
Failed to drop table T_0eb34fb2005c4a23a0b227c55f7a10aePer_myobject
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_2dfcdf1402ff498d9fd6e41924900493Per_Image
Failed to drop table T_2dfcdf1402ff498d9fd6e41924900493Per_myobject
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_6e8aa2093d5b48db982af420bbcccfdePer_Image
Failed to drop table T_6e8aa2093d5b48db982af420bbcccfdePer_myobject
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_255f821918fa4806bd051a5708075003Per_Image
Failed to drop table T_255f821918fa4806bd051a5708075003Per_myobject
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_de0865d6cc2146769cad44d2d892e2aaPer_Image
Failed to drop table T_de0865d6cc2146769cad44d2d892e2aaPer_myobject
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_18438bc5041b4516a668c2ba31d8cea9Per_Image
Failed to drop table T_18438bc5041b4516a668c2ba31d8cea9Per_myobject
Failed to drop table T_18438bc5041b4516a668c2ba31d8cea9Per_altobject
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_196030a7195f4d27833f873a8742aa46Per_Image
Failed to drop table T_196030a7195f4d27833f873a8742aa46Per_myobject
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_94f46edd360c4cba88588f5e409be2a4Per_Image
Failed to drop table T_94f46edd360c4cba88588f5e409be2a4Per_Object
Failed to drop table T_94f46edd360c4cba88588f5e409be2a4Per_Well_avg
Failed to drop table T_94f46edd360c4cba88588f5e409be2a4Per_Well_median
Failed to drop table T_94f46edd360c4cba88588f5e409be2a4Per_Well_std
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_874cf9a676d649609ed40182af94c9c8Per_Image
Failed to drop table T_874cf9a676d649609ed40182af94c9c8Per_myobject
Failed to drop table T_874cf9a676d649609ed40182af94c9c8Per_altobject
Failed to drop table T_874cf9a676d649609ed40182af94c9c8Per_Well_avg
Failed to drop table T_874cf9a676d649609ed40182af94c9c8Per_Well_median
Failed to drop table T_874cf9a676d649609ed40182af94c9c8Per_Well_std
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_61d656c4c23e431fbc71c14406f46f5cPer_Image
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_d372b26270be4cd9b59b8d8fd9c1c46aPer_Image
Failed to drop table T_d372b26270be4cd9b59b8d8fd9c1c46aPer_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_e107e99e6e324694b14a27f363c4f426Per_Image
Failed to drop table T_e107e99e6e324694b14a27f363c4f426Per_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_66152e5973794700bf7f23ca91450a2fPer_Image
Failed to drop table T_66152e5973794700bf7f23ca91450a2fPer_myobject
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_b8b26b4c9a5d40108870989aced05120Per_Image
Failed to drop table T_b8b26b4c9a5d40108870989aced05120Per_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_2e2898694ef9495c9828c2b3e6238e9dPer_Image
Failed to drop table T_2e2898694ef9495c9828c2b3e6238e9dPer_Object
--------------------- >> end captured stdout << ----------------------
]]>> begin captured stdout << ---------------------
Failed to drop table T_bc730b5c264c472c8e67c4e742de6c75Per_Image
Failed to drop table T_bc730b5c264c472c8e67c4e742de6c75Per_myobject
Failed to drop table T_bc730b5c264c472c8e67c4e742de6c75Per_altobject
--------------------- >> end captured stdout << ----------------------
]]>> begin captured logging << --------------------
PipelineStatistics: INFO: Times reported are CPU times for each module, not wall-clock time
PipelineStatistics: INFO: Thu Aug 11 20:19:52 2011: Image # 1, module LoadData # 1: 0.00 sec (bg)
--------------------- >> end captured logging << ---------------------
]]>
x for x in os.listdir(path)
OSError: [Errno 2] No such file or directory: '/tmp/tmpDkb2RK/None'
]]>
x for x in os.listdir(path)
OSError: [Errno 2] No such file or directory: '/tmp/tmpDkb2RK/None'
]]>
x for x in os.listdir(path)
OSError: [Errno 2] No such file or directory: '/tmp/tmpDkb2RK/None'
]]>
x for x in os.listdir(path)
OSError: [Errno 2] No such file or directory: '/tmp/tmpDkb2RK/None'
]]>
x for x in os.listdir(path)
OSError: [Errno 2] No such file or directory: '/tmp/tmpDkb2RK/None'
]]>
x for x in os.listdir(path)
OSError: [Errno 2] No such file or directory: '/tmp/tmpDkb2RK/None'
]]>
x for x in os.listdir(path)
OSError: [Errno 2] No such file or directory: '/tmp/tmpDkb2RK/None'
]]>> begin captured logging << --------------------
cellprofiler.modules.loadimages: WARNING: Failed to load /usr/cp2/ExampleImages/ExampleSBSImages/Channel1-01-A-01.tif with bioformats. Use PIL instead
Traceback (most recent call last):
File "/usr/cp2/CellProfiler/cellprofiler/modules/loadimages.py", line 2939, in provide_image
channel_names = channel_names)
File "bioformats/formatreader.py", line 373, in load_using_bioformats
File "/usr/cp2/CellProfiler/cellprofiler/utilities/jutil.py", line 452, in method
File "/usr/cp2/CellProfiler/cellprofiler/utilities/jutil.py", line 390, in call
JavaException: Java Advanced Imaging (JAI) is required to read some TIFF files. Please install JAI from https://jai.dev.java.net/
--------------------- >> end captured logging << ---------------------
]]>> begin captured logging << --------------------
PipelineStatistics: INFO: Pipeline saved with CellProfiler SVN revision 9161
--------------------- >> end captured logging << ---------------------
]]>> begin captured logging << --------------------
PipelineStatistics: INFO: Pipeline saved with CellProfiler SVN revision 9161
--------------------- >> end captured logging << ---------------------
]]>> begin captured logging << --------------------
PipelineStatistics: INFO: Pipeline saved with CellProfiler SVN revision 9954
root: ERROR: Failed to load pipeline
Traceback (most recent call last):
File "/usr/cp2/CellProfiler/cellprofiler/pipeline.py", line 758, in loadtxt
File "/usr/cp2/CellProfiler/cellprofiler/cpmodule.py", line 182, in set_settings_from_values
File "/usr/cp2/CellProfiler/cellprofiler/modules/run_imagej.py", line 663, in prepare_settings
File "/usr/cp2/CellProfiler/cellprofiler/modules/run_imagej.py", line 255, in get_command_settings
File "/usr/cp2/CellProfiler/cellprofiler/modules/run_imagej.py", line 238, in get_cached_commands
ImportError: No module named ijbridge
--------------------- >> end captured logging << ---------------------
]]>> begin captured logging << --------------------
PipelineStatistics: INFO: Pipeline saved with CellProfiler SVN revision 10033
root: ERROR: Failed to load pipeline
Traceback (most recent call last):
File "/usr/cp2/CellProfiler/cellprofiler/pipeline.py", line 758, in loadtxt
File "/usr/cp2/CellProfiler/cellprofiler/cpmodule.py", line 182, in set_settings_from_values
File "/usr/cp2/CellProfiler/cellprofiler/modules/run_imagej.py", line 663, in prepare_settings
File "/usr/cp2/CellProfiler/cellprofiler/modules/run_imagej.py", line 255, in get_command_settings
File "/usr/cp2/CellProfiler/cellprofiler/modules/run_imagej.py", line 238, in get_cached_commands
ImportError: No module named ijbridge
--------------------- >> end captured logging << ---------------------
]]>> begin captured logging << --------------------
PipelineStatistics: INFO: Pipeline saved with CellProfiler SVN revision 10521
root: ERROR: Failed to load pipeline
Traceback (most recent call last):
File "/usr/cp2/CellProfiler/cellprofiler/pipeline.py", line 758, in loadtxt
File "/usr/cp2/CellProfiler/cellprofiler/cpmodule.py", line 182, in set_settings_from_values
File "/usr/cp2/CellProfiler/cellprofiler/modules/run_imagej.py", line 663, in prepare_settings
File "/usr/cp2/CellProfiler/cellprofiler/modules/run_imagej.py", line 255, in get_command_settings
File "/usr/cp2/CellProfiler/cellprofiler/modules/run_imagej.py", line 238, in get_cached_commands
ImportError: No module named ijbridge
--------------------- >> end captured logging << ---------------------
]]>> begin captured logging << --------------------
PipelineStatistics: INFO: Pipeline saved with CellProfiler SVN revision 9438
--------------------- >> end captured logging << ---------------------
]]>> begin captured logging << --------------------
PipelineStatistics: INFO: Pipeline saved with CellProfiler SVN revision 9514
--------------------- >> end captured logging << ---------------------
]]>> begin captured logging << --------------------
PipelineStatistics: INFO: Pipeline saved with CellProfiler SVN revision 10237
--------------------- >> end captured logging << ---------------------
]]>> begin captured logging << --------------------
PipelineStatistics: INFO: Pipeline saved with CellProfiler SVN revision 10782
--------------------- >> end captured logging << ---------------------
]]>> begin captured logging << --------------------
PipelineStatistics: INFO: Pipeline saved with CellProfiler SVN revision 9870
--------------------- >> end captured logging << ---------------------
]]>