Publications

  • Neural Ordinary Differential Equations

  • TrackSig: reconstructing evolutionary trajectories of mutation signature activity

    Pre-print
  • The Evolutionary Landscape of Localized Prostate Cancers Drives Clinical Aggression

    Cell
  • Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types

    To be submitted to Nature
  • The evolutionary history of 2,658 cancers

    Submitted to Nature
  • A modification of bump hunting approach for genome-wide identification of novel imprinted genes

    Submitted to Bioinformatics

Talks and posters

  • Reconstructing changes in mutational processes during tumour evolution

    RECOMB Satellite Workshop on Computational Cancer Biology( Recomb-CCB)
    Talk, Jul, 2017
    Slides

  • Topic modelling through time to track tumour evolution

    NIPS, Machine Learning in Computational Biology workshop
    Poster, Dec, 2016
    Poster

  • Reconstructing changes in mutational processes during tumour evolution

    Biological Data Science meeting at Cold Spring Harbor Laboratory
    Talk, Oct, 2016

  • Using a bump hunting approach for genome-wide identification of novel imprinted genes

    Genome Informatics at Cold Spring Harbor Laboratory
    Talk, Oct, 2015

Miscellaneous

  • Slides and notes on geometric interpretation on Nesterov accelerated gradient by Bubeck et al.

    Dec, 2017
    Slides Lecture notes

  • Review of deep learning methods in biology

    Sep, 2017
    Slides

Teaching

I have been a teaching assistant in the following courses in University of Toronto:

  • CSC411/2515: Introduction to Machine Learning
  • CSC263: Data Structures and Analysis
  • CSC236: Introduction to Theory of Computation
  • CSC108, CSC148: Introduction to Computer Science