BCB 410 Applied Bioinformatics
Fall 2008 - Course Webpage
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Course Announcements:
Instructor:
Ryan Lilien; email: bcb410
<<at>> cs <dot> toronto
<dot> edu
TA: Navdeep Jaitly, Pratt 286, email: bcb410-ta <<at>> cs <dot> toronto <<dot> edu
Lectures: Mondays 10-12noon, Pratt 266 (Note: On Sept 29th we will be in Pratt 376)
Office Hours: Ryan: Mondays 4-5:30p, please email ahead of
time, Pratt
286A; Navdeep (by appointment)
Text: Protein
Bioinformatics: An Algorithmic Approach to Sequence and Structure
Analysis, Eidhammer, Jonassen, and Taylor (Click
Here for Possible Retailers)
Text Errata: Download
here
A list of useful Biological Terms
| Week | Topic |
| 1 (8/9) | Course Overview, CompBio Intro, Bio Review |
| 2 (15/9) | Unit 1 (week 1): Sequence Alignment, Assembly, Phylogenitic/Evolutionary Trees |
| 3 (22/9) | Unit 1 (week 2) |
| 4 (29/9) | Unit 1 (week 3) |
| 5 (6/10) | Finish Unit 1; Start Unit 2: Structure
Alignment, Prediction, Determination, Modeling |
| 6 (13/10) | Thanksgiving - No class |
| 7 (20/10) | Unit 2 (week 1) |
| 8 (27/10) | Unit 2 (week 2) |
| 9 (3/11) | -- IN-CLASS EXAM, 10-11am -- Navdeep Jaitly special Mass Spectrometry lecture 11-12 |
| 10 (10/11) | Unit 2 (week 3) |
| 11 (17/11) | Unit 2 (week 4) |
| 12 (24/11) | Unit 3 (week 1): DNA Microarrays |
| 13 (1/12) | Unit 4 (week 1): Protein Networks and Systems Biology |