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Kopal Garg
I am a data scientist working on problems at the intersection of machine learning and biology.
I enjoy cloud computing and deep learning. I have experience developing cloud-based platforms for analyzing large genomics sequencing datasets and building, and containerizing deep learning models for time series forecasting.
gargkopal24[at]gmail.com  / 
contact for CV  / 
LinkedIn  / 
Personal GitHub  / 
Work GitHub
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M.Sc. in Computer Science
Department of Computer Science, University of Toronto
Sept. 2021 - Dec. 2022 | Toronto, ON
Graduate Scholarship
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B.A.Sc in Biomedical Engineering, Co-op
Faculty of Applied Science and Engineering, University of Waterloo
Sept. 2016 - May 2021 | Waterloo, ON
President's Scholarship
Dean's Honour List - 2019-2021
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Data Scientist and Data Engineer
Cartography
Dec 2022 - Present | Remote
Cloud-based platform for processing and analyzing large genomics sequencing datasets
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Data Scientist Intern
Broad Institue of MIT and Harvard
May. 2019 - Aug 2021 | Cambridge, MA
Research in computational biology, genome-wide association studies, singel-cell RNA sequencing studies.
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Time-Varying Correlation Networks for Interpretable Change Point Detection
Kopal Garg, Sana Tonekaboni, Anna Goldenberg
In submission, 2022
github
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Single-cell multi-omics reveals dynamics of purifying selection of pathogenic mitochondrial DNA across human immune cells
Caleb A Lareau, Sonia M Dubois, Frank A Buquicchio, Yu-Hsin Hsieh, Kopal Garg , Pauline Kautz, Lena Nitsch, Samantha D Praktiknjo, Patrick Maschmeyer, Jeffrey M Verboon, Jacob C Gutierrez, Yajie Yin, Evgenij Fiskin, Wendy Luo, Eleni Mimitou, Christoph Muus, Rhea Malhotra, Sumit Parikh, Mark D Fleming, Lena Oevermann, Johannes Schulte, Cornelia Eckert, Anshul Kundaje, Peter Smibert, Ansuman T Satpathy, Aviv Regev, Vijay G Sankaran, Suneet Agarwal, Leif S Ludwig
In submission, 2022
github
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Classification of Chest X-Rays Using Shallow and Deep Learning Methods
Kopal Garg
CSC2515, 2021
report
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Anti-Asian Hate Speech Classification
Kopal Garg
CSC2612, 2021
report |
github
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Reliability of a Three-Dimensional Scanning Technique and Metrics Quantifying Pectus Deformities
Tomasz Bugajski, Bahareh Vafadar, Emma Gray, Kopal Garg, Marc Schneider, [...] Janet Ronsky
International Society of Biomechanics, 2019
braceworks
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DNA Methylation Signature for EZH2 Functionally Classifies Sequence Variants in Three PRC2 Complex Genes
Sanaa Choufani, William T Gibson, Andrei L Turinsky, Brian H Y Chung, Tianren Wang, Kopal Garg, Alessandro Vitriol, [...], Rosanna Weksberg
American Journal of Human Genetics, 2020
pubmed
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Web-app: gene expression
Display the schematic of gene expression during adult and fetal erythropoiesis |
github |
app
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R package: gggwas
R package for various Genome-Wide Association Study visualizations |
github
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Deep Learning for face shape classification and hair-style recommendation
github
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Web-app: isoform frequencies
Visualize frequncies of isoforms within single genes for different hematopoietic cell lines |
github
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Web-app: variant filtering
Interactive variant tables for easy filtering. |
github
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