RNAcontext is now implemented as a webserver.
RNAcontext source code and instructions are available here.
If you would like to run RNAcontext with long sequences (e.g. mRNAs) we recommend that you use RNAplfold instead of Sfold. You can download the RNAplfold scripts and helper code to generate annotation profiles from here.
Position Weight Matrices that are displayed in Figure 5 can be downloaded from here. Please see the README file to plot these matrices correctly.
RNAcompete derived datasets that are used in the paper can be downloaded from here.
RNAcontext predicted scores for all the RBPs are available here.
Area under the Precision-Recall Curves for Figures 2 and 3 are here.
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