Refereed Publications

• D. Warde-Farley^*, S. Donaldson^*, O. Comes^*, K. Zuberi^*, R. Badrawi, P. Chao, M. Franz, C. Grouios, F. Kazi, C. Tannus Lopes, A. Maitland, S. Mostafavi, J. Montojo, Q. Shao, G. Wright, G. Bader and Q. Morris. “The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function”. Nucleic Acids Research 2010 Jul 1;38 Suppl:W214-20. [Full Text (HTML)] [Screen PDF] [Print PDF]
• I.W. Taylor, R. Linding, D. Warde-Farley, Y. Liu, C. Pesquita, D. Faria, S. Bull, T. Pawson, Q. Morris, and J.L. Wrana. “Dynamic modularity in protein interaction networks predicts breast cancer outcome”. Nature Biotechnology 2009, 27, 199–204. [Abstract]
• S. Mostafavi, D. Ray, D. Warde-Farley, C. Grouios, and Q.D. Morris. “GeneMANIA: a real-time Multiple Association Network Integration Algorithm for predicting gene function”. Genome Biology 2008, 9(Suppl 1):S4. [PDF]
• L. Pena-Castillo, M. Tasan, C.L. Myers, H. Lee, T. Joshi, C. Zhang, Y. Guan, M. Leone, A. Pagnani, W.K. Kim, C. Krumpelman, W. Tian, G. Obozinski, Y. Qi, S. Mostafavi, G.N. Lin, G. Berriz, F. Gibbons, G. Lanckriet, J. Qiu, C. Grant, Z. Barutcuoglu, D.P. Hill , D. Warde-Farley, C. Grouios, D. Ray, J.A. Blake, M. Deng, M.I. Jordan, W.S. Noble, Q. Morris, J. Klein-Seetharaman, Z. Bar-Joseph, T. Chen, F. Sun, O.G. Troyanskaya, E.M. Marcotte, D. Xu, T.R. Hughes, and F.P. Roth. “A critical assessment of M. musculus gene function prediction using integrated genomic evidence”. Genome Biology 2008, 9(Suppl 1):S2 [PDF]

^* = joint first-authorship

Poster Presentations

• D. Warde-Farley, Y. Chong, J. Koh, J. Moffat, and Q. Morris. "A mixture model approach to high-throughput cell cycle analysis in budding yeast". Presented at Intelligent Systems in Molecular Biology (ISMB) 2010, Boston, USA.