MIE453 - Bioinformatics Systems (Fall 06)

Tutorial

Date		Week	Topic	More Readings
Sept.	11	1	Introduction to Perl	Tisdall: Chapters 1-3 Perl Basics by Peter vanHeusden
	18	2	Arrays & Hashes	Tisdall: Chapters 4,8 Arrays & Hashes by Peter van Heusden
	25	3	Loops, Control & Subroutines	Tisdall: Chapters 5,6 Loops and Subroutines by Peter van Heusden Control by Peter van Heusden References by Peter van Heusden
Oct.	2	4	Regular Expression	Tisdall: Chapters 9 RegExp by Peter van Heusden
	9	5	(Thanksgiving)
	16	6	(Midterm Review)
	23	7	Debugging Perl Programs	Perl Debugging Tutorial 1 Perl Debugging Tutorial 2
	30	8	MySQL & Perl DBI	Beginning MySQL Tutorial Perl DBI Tutorial on perl.com
	6	9	HTML & CGI	HTML Tutorial XHTML Tutorial CGI Tutorial
Nov.	13	10	Modules & OO Programming	Module Tutorial Reference & Object Tutorials 1, 2
	20	11	Example
	27	12	(Final Review)

Books for suggested readings

Tisdall: Beginning Perl for Bioinformatics, James Tisdall, ISBN, 0-596-00080-4, 2001
Moorhouse:Bioinformatics, Biocomputing and Perl : an introduction to bioinformatics computing skills and practice, Michael Moorhouse, Chichester ; Hoboken, NJ : Wiley, 047085331X (pbk.), 2004

Unix Resources

Unix and Shell Basics (from Software Carpentry): 1, 2
Unix Reference Card
vi Reference Card

Perl Resources

Perl IDE

MySQL Resources

HTML Resources